Research

Publications

Research from our lab in multimodal AI, foundation models, clinical intelligence, and more.

Using Consensus-based Reasoning and Large Language Models to Extract Structured Data from Surgical Pathology Reports

Clinical Data Intelligence

Aakash Tripathi, Asim Waqas, Kavya Venkatesan, Ehsan Ullah, Asma Khan, Farah Khalil, Zarifa Gahramanli Ozturk, Daryoush Saeed-Vafa, Wei-Shen Chen, Marilyn M. Bui, Matthew B. Schabath, Ghulam Rasool

Laboratory Investigation · 2026 · DOI

Explainable AI in Genomics: Transcription Factor Binding Site Prediction with Mixture of Experts

Preprint Multimodal AI

Aakash Tripathi, Ian E. Nielsen, Muhammad Umer, Ravi P. Ramachandran, Ghulam Rasool

Under review · 2025

Reasoning Beyond Accuracy: Expert Evaluation of Large Language Models in Diagnostic Pathology

Preprint Clinical Data Intelligence

Asim Waqas, Ehsan Ullah, Asma Khan, Farah Khalil, Zarifa Gahramanli Ozturk, Vaibhav Chumbalkar, Daryoush Saeed-Vafa, Zena Jameel, Wei-Shen Chen, Humberto Trejo Bittar, Jasreman Dhillon, Rajendra S. Singh, Andrey Bychkov, Anil V. Parwani, Marilyn M. Bui, Matthew B. Schabath, Ghulam Rasool

Under review · 2025

Multimodal AI-driven Biomarker for Early Detection of Cancer Cachexia

Preprint Multimodal AI

Sabeen Ahmed, Nathan Parker, Margaret Park, Daniel Jeong, Lauren Peres, Evan W. Davis, Jennifer B. Permuth, Erin Siegel, Matthew B. Schabath, Yasin Yilmaz, Ghulam Rasool

Under review · 2025

Reliable Radiologic Skeletal Muscle Area Assessment – A Biomarker for Cancer Cachexia Diagnosis

Preprint Medical Imaging

Sabeen Ahmed, Nathan Parker, Margaret Park, Daniel Jeong, Lauren Peres, Evan W. Davis, Jennifer B. Permuth, Erin Siegel, Matthew B. Schabath, Yasin Yilmaz, Ghulam Rasool

Under review · 2025

Clinical AI in Radiology: Foundations, Trends, and Emerging Directions with Use Cases from Moffitt Cancer Center

Preprint Medical Imaging

Iryna Hartsock, Nikolas Koutsoubis, Sabeen Ahmed, Nathan Parker, Matthew Schabath, Cyrillo Araujo, Cesar Lam, Robert Gatenby, Ghulam Rasool

Under review in MDPI Cancers · 2025

HONeYBEE: Enabling Scalable Multimodal AI in Oncology Through Foundation Model-Driven Embeddings

Multimodal AI

Aakash Tripathi, Asim Waqas, Yasin Yilmaz, Ghulam Rasool

npj Digital Medicine · 2025 · DOI

Self-Normalizing Multi-Omics Neural Network for Pan-Cancer Prognostication

Multimodal AI

Asim Waqas, Aakash Tripathi, Sabeen Ahmed, Ashwin Mukund, Hamza Farooq, Matthew B. Schabath, Paul Stewart, Mia Naeini, Ghulam Rasool

International Journal of Molecular Sciences · 2025 · DOI

Improving Radiology Report Conciseness and Structure via Local Large Language Model

Clinical Data Intelligence

Iryna Hartsock, Cyrillo Araujo, Les Folio, Ghulam Rasool

Journal of Imaging Informatics in Medicine · 2025 · DOI

Privacy-Preserving Federated Learning and Uncertainty Quantification in Medical Imaging

Privacy & Federated Intelligence

Nikolas Koutsoubis, Yasin Yilmaz, Matthew Schabath, Ghulam Rasool

RSNA Radiology AI · 2025 · DOI

EAGLE: Efficient Alignment of Generalized Latent Embeddings for Multimodal Survival Prediction with Interpretable Attribution Analysis

Preprint Multimodal AI

Aakash Tripathi, Asim Waqas, Matthew B. Schabath, Yasin Yilmaz, Ghulam Rasool

Preprint · 2025

Building Flexible, Scalable, and Machine Learning-Ready Multimodal Oncology Datasets

Multimodal AI

Aakash Tripathi, Asim Waqas, Kavya Venkatesan, Yasin Yilmaz, Ghulam Rasool

Sensors · 2024 · DOI

Digital Pathology and Multimodal Learning on Oncology Data

Multimodal AI

Asim Waqas, Javeria Naveed, Warda Shahnawaz, Shoaib Asghar, Marilyn M. Bui, Ghulam Rasool

BJR Artificial Intelligence · 2024 · DOI

Vision-Language Models for Medical Report Generation and Visual Question Answering: A Review

Multimodal AI

Iryna Hartsock, Ghulam Rasool

Frontiers in AI · 2024 · DOI

Multimodal Data Integration for Oncology in the Era of Deep Neural Networks: A Review

Multimodal AI

Asim Waqas, Aakash Tripathi, Ravi P. Ramachandran, Paul Stewart, Ghulam Rasool

Frontiers in Artificial Intelligence · 2024 · DOI

Embedding-based Multimodal Learning on Pan-Squamous Cell Carcinomas for Improved Survival Outcomes

Preprint Multimodal AI

Asim Waqas, Aakash Tripathi, Paul Stewart, Mia Naeini, Ghulam Rasool

Preprint · 2024 · DOI

Privacy-Preserving Federated Learning in Medical Imaging with Uncertainty Estimation

Preprint Privacy & Federated Intelligence

Nikolas Koutsoubis, Yasin Yilmaz, Matthew Schabath, Ghulam Rasool

Preprint · 2024 · DOI

TRUST-RNNs: Trustworthy Recurrent Uncertainty Propagation

Trustworthy AI

Dimah Dera, Sabeen Ahmed, Nidhal Bouaynaya, Ghulam Rasool

IEEE Transactions on Knowledge and Data Engineering · 2023 · DOI

Transformers for Time-series Analysis: A Tutorial

Trustworthy AI

Sabeen Ahmed, Ian Nielsen, Aakash Tripathi, Ravi Ramachandran, Ghulam Rasool

Circuits, Systems, and Signal Processing (CSSP) · 2023 · DOI

A Comparison of Feature Selection Techniques for First-Day Mortality Prediction in the ICU

Trustworthy AI

Jacob Epifano, Aakash Tripathi, Alison Silvestri, Alexander Yu, Ravi Ramachandran, Ghulam Rasool

2023 IEEE International Symposium on Circuits and Systems · 2023

Revolutionizing Digital Pathology with the Power of Generative AI and Foundation Models

Multimodal AI

Asim Waqas, Marilyn M. Bui, Eric F. Glassy, Issam El Naqa, Piotr A. Borkowski, Andrew A. Borkowski, Ghulam Rasool

Laboratory Investigation · 2023 · DOI

Exploring Robust Architectures for Deep Artificial Neural Networks

Trustworthy AI

Asim Waqas, Nidhal Bouaynaya, Hama Farooq, Ghulam Rasool

Communication Engineering · 2022 · DOI

Failure Detection in Deep Neural Networks for Medical Imaging

Trustworthy AI

Sabeen Ahmed, Dimah Dera, Muhammad Saud Ul Hassan, Nidhal Bouaynaya, Ghulam Rasool

Frontiers in Medical Technology · 2022 · DOI

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